ExtractedData.java

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/*******************************************************************************
 * Licensed under the Apache License, Version 2.0 (the "License");
 * you may not use these files except in compliance with the License.
 * You may obtain a copy of the License at
 *
 * http://www.apache.org/licenses/LICENSE-2.0
 *
 * Unless required by applicable law or agreed to in writing, software
 * distributed under the License is distributed on an "AS IS" BASIS,
 * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 * See the License for the specific language governing permissions and
 * limitations under the License.
 *
 * Copyright 2014 - Juan Pino, Aurelien Waite, William Byrne
 *******************************************************************************/
package uk.ac.cam.eng.extraction.hadoop.datatypes;

import java.io.DataInput;
import java.io.DataOutput;
import java.io.IOException;

import org.apache.hadoop.io.ByteWritable;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.Writable;

import uk.ac.cam.eng.extraction.Alignment;


public class ExtractedData implements Writable {

        private ProvenanceCountMap provenance;
        private AlignmentCountMapWritable alignment;

        public ExtractedData() {
                provenance = new ProvenanceCountMap();
                alignment = new AlignmentCountMapWritable();
        }

        public ProvenanceCountMap getProvenanceCountMap() {
                return provenance;
        }

        public AlignmentCountMapWritable getAlignmentCountMapWritable() {
                return alignment;
        }

        public void clear() {
                provenance.clear();
                alignment.clear();
        }

        public void putProvenanceCount(
                        ByteWritable provenanceName, IntWritable count) {
                provenance.put(provenanceName, count);
        }

        public void putAlignmentCount(Alignment align, int count) {
                alignment.put(align, count);
        }

        public void increment(ExtractedData other) {
                provenance.increment(other.provenance);
                alignment.increment(other.alignment);
        }

        /*
         * (non-Javadoc)
         * 
         * @see org.apache.hadoop.io.Writable#write(java.io.DataOutput)
         */
        @Override
        public void write(DataOutput out) throws IOException {
                provenance.write(out);
                alignment.write(out);
        }

        /*
         * (non-Javadoc)
         * 
         * @see org.apache.hadoop.io.Writable#readFields(java.io.DataInput)
         */
        @Override
        public void readFields(DataInput in) throws IOException {
                provenance.readFields(in);
                alignment.readFields(in);
        }

        public String toString() {
                return provenance.toString() + "\t" + alignment.toString();
        }
}